vcf_extract_indivs

extract vcfR format data by individuals

Usage

vcf_extract_indivs(vcf, indiv, whitelist = TRUE, f_invar = TRUE)

Arguments

vcf

-> vcfR object

indiv

-> individuals to retain/drop in vcf (factor)

Value

extracted vcfR object

Details

This function extracts the vcfR object by individuals, returning new vcfR object

Author

Tomas Hrbek December 2020

Examples

vcf_extract_indivs(vcf = my_vcf, indiv = indivs_to_keep, whitelist = TRUE)
#> Error: object 'my_vcf' not found
vcf_extract_indivs(vcf = my_vcf, indiv = indivs_to_drop, whitelist = FALSE)
#> Error: object 'my_vcf' not found
vcf_extract_indivs(my_vcf, indivs_to_keep)
#> Error: object 'my_vcf' not found