remove genotypes below coverage threshold from vcfR format data
Usage
vcf_filter_coverage(vcf, cover = 10, f_invar = TRUE)
Arguments
- vcf
-> vcfR object
Value
subsetted vcfR object
Details
This function removes genotypes below coverage threshold from the vcfR object
Author
Tomas Hrbek November 2022
Examples
vcf_filter_coverage(vcf = my_vcf, cover = 10)
#> Error: object 'my_vcf' not found
vcf_filter_coverage(my_vcf)
#> Error: object 'my_vcf' not found