vcf_filter_oneSNP

subsets vcfR format data keeping only 1 SNP per locus

Usage

vcf_filter_oneSNP(vcf)

Arguments

vcf

-> vcfR object

Value

subsetted vcfR object

Details

This function subsets the vcfR object keeping only 1 SNP per locus, returning new vcfR object The first SNP independent of quality is taken (may mofify this in future)

Author

Tomas Hrbek February 2022

Examples

vcf_filter_oneSNP(vcf = my_vcf)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'x' in selecting a method for function 'getCHROM': object 'my_vcf' not found
vcf_filter_oneSNP(my_vcf)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'x' in selecting a method for function 'getCHROM': object 'my_vcf' not found