vcf_filter_quality

remove loci below quality threshold from vcfR format data

Usage

vcf_filter_quality(vcf, qual = 20)

Arguments

vcf

-> vcfR object

Value

subsetted vcfR object

Details

This function removes loci below quality threshold from the vcfR object

Author

Tomas Hrbek February 2022

Examples

vcf_filter_quality(vcf = my_vcf, qual = 20)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'x' in selecting a method for function 'getQUAL': object 'my_vcf' not found
vcf_filter_quality(my_vcf)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'x' in selecting a method for function 'getQUAL': object 'my_vcf' not found