Package index
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VCFArrow-class - VCFArrow S4 class
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assess_vcf_coverage() - assess_vcf_coverage
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assess_vcf_missing_data() - assess_vcf_missing_data
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read_vcf() - read_vcf
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set_vcf_groups() - set_vcf_groups
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show(<VCFArrow>) - Show method for VCFArrow
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`[`(<VCFArrow>) - Subset method for VCFArrow
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vcf2admixture() - vcf2admixture
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vcf2apparent() - vcf2apparent
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vcf2arlequin() - vcf2arlequin
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vcf2bayesass() - vcf2bayesass
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vcf2bayescan() - vcf2bayescan
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vcf2eigenstrat() - vcf2eigenstrat
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vcf2fasta() - vcf2fasta
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vcf2fineradstructure() - vcf2fineradstructure
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vcf2genepop() - vcf2genepop
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vcf2genlight() - vcf2genlight
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vcf2gt_long() - vcf2gt_long
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vcf2migrate() - vcf2migrate
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vcf2nexus() - vcf2nexus
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vcf2plink_bed() - vcf2plink_bed
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vcf2plink_ped() - vcf2plink_ped
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vcf2related() - vcf2related
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vcf2smartsnp() - vcf2smartsnp
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vcf2snapp() - vcf2snapp
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vcf2snmf() - vcf2snmf
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vcf2structure() - vcf2structure
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vcf2treemix() - vcf2treemix
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vcf_bind() - vcf_bind
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vcf_copy() - vcf_copy
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vcf_extract_groups() - vcf_extract_groups
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vcf_extract_samples() - vcf_extract_samples
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vcf_filter_adr() - vcf_filter_adr
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vcf_filter_biallelic() - vcf_filter_biallelic
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vcf_filter_coverage() - vcf_filter_coverage
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vcf_filter_hets() - vcf_filter_hets
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vcf_filter_indels() - vcf_filter_indels
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vcf_filter_invariant() - vcf_filter_invariant
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vcf_filter_maf() - vcf_filter_maf
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vcf_filter_missing() - vcf_filter_missing
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vcf_filter_missingness() - vcf_filter_missingness
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vcf_filter_multiSNV() - vcf_filter_multiSNV
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vcf_filter_oneSNV() - vcf_filter_oneSNV
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vcf_filter_paralogs() - vcf_filter_paralogs
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vcf_filter_pass() - vcf_filter_pass
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vcf_filter_quality() - vcf_filter_quality
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vcf_filter_rank() - vcf_filter_rank
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vcf_filter_rpt() - vcf_filter_rpt
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vcf_gc() - Garbage-collect VCFArrow temp directories
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vcf_memory_estimate() - Estimate RAM required for a VCFArrow export operation
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vcf_set_workers() - vcf_set_workers
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vcf_stats() - vcf_stats
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vcf_sub_SNVs() - vcf_sub_loci
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vcf_sub_SNVs_stratified() - vcf_sub_loci_stratified
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vcf_suggest_chunk_size() - Suggest a chunk_size for read_vcf() given available RAM
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vcf_theta() - vcf_theta
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write_vcf() - write_vcf