Generating a Morphological Delimitation Table

morph_tbl() returns species partition hypothesis estimated from a prior taxonomic identifications supplied by the user.

Usage

morph_tbl(labels, sppVector, delimname = "morph")

Arguments

labels

Vector of unique sequence ID labels.

sppVector

Vector of corresponding morphological species delimitation groups.

delimname

Character. String to rename the delimitation method in the table. Default to 'morph'.

Value

an object of class tbl_df.

Details

morph_tbl() uses information in a species name vector to label each unique sample with a number corresponding to this name.

Author

Rupert A. Collins

Examples

# create a tibble
morph_df <- morph_tbl(
  labels = geophagus_info$gbAccession,
  sppVector = geophagus_info$scientificName
)

# check
morph_df
#> # A tibble: 354 × 2
#>    labels     morph
#>    <chr>      <int>
#>  1 MZ504486.1     1
#>  2 MZ504531.1     1
#>  3 MZ504560.1     1
#>  4 MZ504525.1     1
#>  5 MZ504604.1     1
#>  6 MZ504501.1     1
#>  7 MZ504559.1     1
#>  8 MZ504504.1     1
#>  9 MZ504512.1     1
#> 10 MZ504546.1     1
#> # ℹ 344 more rows