Select the Best Partition from a Delimitation Result — best_partition • delimtools

Generic function to extract the most informative partition from an ABGD or ASAP result object.

Usage

best_partition(x, ...)

# S3 method for class 'abgd'
best_partition(x, pass = c("recursive", "initial"), ...)

# S3 method for class 'asap'
best_partition(x, rank = NULL, ...)

Arguments

x: A delimitation result object ("abgd" or "asap").
...: Additional arguments passed to methods.
pass: Which pass to use: "recursive" (default) or "initial".
rank: Integer. Rank of the partition to return (1 = best ASAP score). If NULL (default), returns rank 1.

Value

A named list describing the selected partition. See method documentation for details.

Examples

if (FALSE) { # \dontrun{
result <- abgd("geophagus.fasta", model = "simple")
best   <- best_partition(result)
best$n_groups
} # }