Generating a Delimitation Hypothesis Table — delim

delim_tbl() returns species partition hypothesis estimated from a prior delimitation hypothesis supplied by the user.

Usage

delim_tbl(labels, sppVector, delimname = NULL)

Arguments

labels: Vector of unique sequence ID labels.
sppVector: Vector of corresponding morphological species delimitation groups.
delimname: Character. User needs to supply string to name the delimitation method in the table. Default to NA.

Value

an object of class tbl_df.

Details

delim_tbl() uses information in a species name vector to label each unique sample with a number corresponding to this name.

Author

Rupert A. Collins

Examples


# create a tibble
delim_df <- delim_tbl(
  labels = geophagus_info$gbAccession,
  sppVector = geophagus_info$scientificName,
  delimname = "SNAPPER"
)

# check
delim_df
#> # A tibble: 354 × 2
#>    labels     SNAPPER
#>    <chr>        <int>
#>  1 MZ504486.1       1
#>  2 MZ504531.1       1
#>  3 MZ504560.1       1
#>  4 MZ504525.1       1
#>  5 MZ504604.1       1
#>  6 MZ504501.1       1
#>  7 MZ504559.1       1
#>  8 MZ504504.1       1
#>  9 MZ504512.1       1
#> 10 MZ504546.1       1
#> # ℹ 344 more rows